thumpd1 THUMP domain containing 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: thumpd1provided by ZNC
Official Full Name: THUMP domain containing 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1805
See related: Ensembl:ENSDARG00000100264 AllianceGenome:ZFIN:ZDB-GENE-040426-1805
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:77221
Summary: Predicted to enable RNA binding activity. Predicted to be involved in tRNA modification. Is expressed in female organism. Orthologous to human THUMPD1 (THUMP domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: suggests misassembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (58981985..58985885)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (58479934..58483834)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in tRNA modification	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within tRNA modification	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: THUMP domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_205657.2 → NP_991220.2 THUMP domain-containing protein 1

Status: VALIDATED

Source sequence(s)

CABZ01083164, EH494342, EH520668

UniProtKB/TrEMBL

A0A0R4IIV9, A0A8M1PEU6

Related

ENSDARP00000134792.1, ENSDART00000170646.2

Conserved Domains (1) summary

cd11717
Location:32 → 236

THUMP_THUMPD1_like; THUMP domain-containing protein 1-like