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raly RALY heterogeneous nuclear ribonucleoprotein [ Danio rerio (zebrafish) ]

Gene ID: 402903, updated on 2-Nov-2024

Summary

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Official Symbol
ralyprovided by ZNC
Official Full Name
RALY heterogeneous nuclear ribonucleoproteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041010-127
See related
Ensembl:ENSDARG00000059972 AllianceGenome:ZFIN:ZDB-GENE-041010-127
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:103445
Summary
Predicted to enable RNA binding activity. Predicted to be active in nucleus. Is expressed in central nervous system; heart rudiment; and neurons. Orthologous to human RALY (RALY heterogeneous nuclear ribonucleoprotein). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See raly in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (50022150..50203682, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (50023494..50205046, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496021 Neighboring gene eukaryotic translation initiation factor 2, subunit 2 beta Neighboring gene uncharacterized LOC101886784 Neighboring gene uncharacterized LOC137496022

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. BAC Recombineering of the Agouti Loci from Spotted Gar and Zebrafish Reveals the Evolutionary Ancestry of Dorsal-Ventral Pigment Asymmetry in Fish. Cal L, et al. J Exp Zool B Mol Dev Evol, 2017 Nov. PMID 28544213, Free PMC Article
  2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC103445

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RNA-binding protein Raly
Names
RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog)
hnRNP-associated with lethal yellow

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205610.1 → NP_991173.1  RNA-binding protein Raly

    See identical proteins and their annotated locations for NP_991173.1

    Status: PROVISIONAL

    Source sequence(s)
    AY398405
    UniProtKB/TrEMBL
    Q6TGV1
    Related
    ENSDARP00000078434.5, ENSDART00000083999.7
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    50022150..50203682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068221689.1 → XP_068077790.1  RNA-binding protein Raly isoform X1

  2. XM_068221690.1 → XP_068077791.1  RNA-binding protein Raly isoform X2

  3. XM_005172104.5 → XP_005172161.1  RNA-binding protein Raly isoform X2

    UniProtKB/TrEMBL
    A0A8M2BJG2, F1QKR6
    Related
    ENSDARP00000118719.2, ENSDART00000143050.3
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  4. XM_005172103.5 → XP_005172160.1  RNA-binding protein Raly isoform X1

    UniProtKB/TrEMBL
    A0A8M2BJH7, F1QAY0
    Related
    ENSDARP00000139787.1, ENSDART00000163648.3
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly
Nucleotide Protein Strain
Heading Accession and Version

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