U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

A730009L09Rik RIKEN cDNA A730009L09 gene [ Mus musculus (house mouse) ]

Gene ID: 402727, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
A730009L09Rikprovided by MGI
Official Full Name
RIKEN cDNA A730009L09 geneprovided by MGI
Primary source
MGI:MGI:3028032
See related
AllianceGenome:MGI:3028032
Gene type
unknown
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm45318
Expression
Low expression observed in reference dataset See more

Genomic context

Go to the top of the page Help
Location:
16 C3.3; 16 46.92 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (84311900..84323275)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (84515012..84526387)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930553E22 gene Neighboring gene STARR-seq mESC enhancer starr_41360 Neighboring gene RNA binding motif, single stranded interacting protein 2 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E5554 Neighboring gene STARR-seq mESC enhancer starr_41361 Neighboring gene predicted gene, 32073 Neighboring gene STARR-positive B cell enhancer ABC_E1495 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:84584241-84584424 Neighboring gene STARR-seq mESC enhancer starr_41362 Neighboring gene transmembrane protein 126A pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    84311900..84323275
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_384996.4 RNA Sequence

  2. XR_004939294.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.