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RPL13AP13 ribosomal protein L13a pseudogene 13 [ Homo sapiens (human) ]

Gene ID: 402214, updated on 17-Sep-2024

Summary

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Official Symbol
RPL13AP13provided by HGNC
Official Full Name
ribosomal protein L13a pseudogene 13provided by HGNC
Primary source
HGNC:HGNC:36541
See related
Ensembl:ENSG00000213940 AllianceGenome:HGNC:36541
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL13A_4_562
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Genomic context

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See RPL13AP13 in Genome Data Viewer
Location:
5q11.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (53206541..53207204)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (54034382..54035045)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (52502371..52503034)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16005 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:52409973-52410472 Neighboring gene molybdenum cofactor synthesis 2 Neighboring gene CRISPRi-validated cis-regulatory element chr5.1275 Neighboring gene CRISPRi-validated cis-regulatory element chr5.1276 Neighboring gene MOCS2 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22545 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16006 Neighboring gene uncharacterized LOC107986380 Neighboring gene uncharacterized LOC105378965

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010205.2 

    Range
    101..764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    53206541..53207204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    54034382..54035045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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