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LOC401557 uncharacterized LOC401557 [ Homo sapiens (human) ]

Gene ID: 401557, updated on 17-Sep-2024

Summary

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Gene symbol
LOC401557
Gene description
uncharacterized LOC401557
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC401557 in Genome Data Viewer
Location:
9q34.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (135181609..135187306)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (147405225..147410922)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (138073455..138079152)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137977814-137978674 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137978675-137979535 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137980170-137980974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137980975-137981778 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:137983799-137983956 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137989975-137990476 Neighboring gene olfactomedin 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137997243-137997767 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137997768-137998293 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137998819-137999344 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138000081-138000642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138000643-138001202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138007797-138008496 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138017982-138018648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138018649-138019315 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138025969-138026770 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138028163-138028906 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138028907-138029652 Neighboring gene uncharacterized LOC102723948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138057350-138057850 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138062007-138062508 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:138064860-138065360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138066123-138066624 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138078411-138079170 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138079171-138079930 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:138089981-138090638 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:138090639-138091296 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138110575-138111150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138111151-138111726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138111727-138112301 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29292 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138114640-138115217 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138115797-138116374 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138116375-138116952 Neighboring gene uncharacterized LOC107987138 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138142531-138143102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138152625-138153124 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138174821-138175368 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138176843-138177509 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138189455-138190251 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138234136-138234848 Neighboring gene long intergenic non-protein coding RNA 2907

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046107.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK127261, AL390778

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    135181609..135187306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    147405225..147410922
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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