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BHLHE22-AS1 BHLHE22 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 401463, updated on 10-Oct-2023

Summary

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Official Symbol
BHLHE22-AS1provided by HGNC
Official Full Name
BHLHE22 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56147
See related
Ensembl:ENSG00000254102
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8q12.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (64574308..64581892, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (64999726..65007314, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (65486865..65494449, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene MIR124-2 host gene Neighboring gene microRNA 124-2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:65322543-65323742 Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene uncharacterized LOC124900252 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27455 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:65499285-65499928 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:65499929-65500572 Neighboring gene NANOG hESC enhancer GRCh37_chr8:65522320-65522853 Neighboring gene basic helix-loop-helix family member e22 Neighboring gene cytochrome P450 family 7 subfamily B member 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27456 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27457 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19243 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19244 Neighboring gene uncharacterized LOC105375879 Neighboring gene uncharacterized LOC105375878

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015374.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090136, AK097150, BC022555, BC068582
    Related
    ENST00000520834.1

  2. NR_152770.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK097150, BC022555, DN995086
    Related
    ENST00000517909.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    64574308..64581892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    64999726..65007314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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