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LINC02991 long intergenic non-protein coding RNA 2991 [ Homo sapiens (human) ]

Gene ID: 401040, updated on 5-Mar-2024

Summary

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Official Symbol
LINC02991provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2991provided by HGNC
Primary source
HGNC:HGNC:33810
See related
Ensembl:ENSG00000196758
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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Location:
2q37.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (239578301..239586094)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (240069620..240077413)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (240499995..240507788)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124908011 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:240423087-240423588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:240423589-240424088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:240427462-240428150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:240441589-240442260 Neighboring gene uncharacterized LOC124908012 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:240565957-240566484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:240566485-240567010 Neighboring gene uncharacterized LOC105373966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:240582179-240582678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:240644837-240645402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:240645403-240645968 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:240667929-240669128 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:240671487-240672397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12504 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:240674643-240675212 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:240678616-240679552 Neighboring gene uncharacterized LOC150935

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Markers

Homology

Clone Names

  • AC079612.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_172921.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK127861
    Related
    ENST00000358775.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    239578301..239586094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    240069620..240077413
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207483.1: Suppressed sequence

    Description
    NM_207483.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

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