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LRRC52-AS1 LRRC52 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 400794, updated on 10-Oct-2023

Summary

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Official Symbol
LRRC52-AS1provided by HGNC
Official Full Name
LRRC52 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:54044
See related
Ensembl:ENSG00000237463 AllianceGenome:HGNC:54044
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 2.7), heart (RPKM 0.3) and 1 other tissue See more
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Genomic context

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See LRRC52-AS1 in Genome Data Viewer
Location:
1q23.3-q24.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (165476842..165582155, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (164823196..164928618, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (165446079..165551392, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene LMX1A antisense RNA 1 Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene NANOG hESC enhancer GRCh37_chr1:165223074-165223646 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_852 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1499 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2015 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:165370087-165370588 Neighboring gene retinoid X receptor gamma Neighboring gene ReSE screen-validated silencer GRCh37_chr1:165446262-165446483 Neighboring gene PRELID1 pseudogene 7 Neighboring gene uncharacterized LOC124904448 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:165530147-165530676 Neighboring gene leucine rich repeat containing 52 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:165565420-165565627 Neighboring gene tRNA-Lys (anticodon CTT) 13-1 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:165571612-165571772 Neighboring gene ribosomal protein S2 pseudogene 10 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:165599392-165599922 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1500 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2016 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2017 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2018 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:165619651-165620850 Neighboring gene microsomal glutathione S-transferase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LRRC52-AS1 is associated with clinical progression and regulates cell migration and invasion in papillary thyroid cancer. Zhou Y, et al. Clin Exp Pharmacol Physiol, 2020 Apr. PMID 31855284
  2. Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects. Hibar DP, et al. Brain Imaging Behav, 2013 Jun. PMID 22903471, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LRRC52-AS1 is associated with clinical progression and regulates cell migration and invasion in papillary thyroid cancer.
    Title: LRRC52-AS1 is associated with clinical progression and regulates cell migration and invasion in papillary thyroid cancer.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026744.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL157714, AL160058, AL356441, KF455049
    Related
    ENST00000421273.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    165476842..165582155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    164823196..164928618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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Research Materials