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LINC02915 long intergenic non-protein coding RNA 2915 [ Homo sapiens (human) ]

Gene ID: 400360, updated on 5-Mar-2024

Summary

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Official Symbol
LINC02915provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2915provided by HGNC
Primary source
HGNC:HGNC:33797
See related
Ensembl:ENSG00000175746 AllianceGenome:HGNC:33797
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C15orf54
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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Location:
15q14
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (39250669..39254845)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (37055605..37059781)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (39542870..39547046)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370777 Neighboring gene uncharacterized LOC105370780 Neighboring gene uncharacterized LOC124903467 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:39505293-39506492 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_39382 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:39567067-39567568 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:39567569-39568068 Neighboring gene Sharpr-MPRA regulatory region 6993 Neighboring gene uncharacterized LOC124903468 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6309 Neighboring gene C15orf54-THBS1 intergenic CAGE-defined monocyte enhancer Neighboring gene uncharacterized LOC105370783

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality. Parsa A, et al. Clin Transl Sci, 2011 Feb. PMID 21348951, Free PMC Article
  2. Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study. Yu B, et al. Genet Epidemiol, 2013 Dec. PMID 23934736, Free PMC Article
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. Hein MY, et al. Cell, 2015 Oct 22. PMID 26496610
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.
EBI GWAS Catalog
Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • FLJ39531

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144507.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC013652, BX647708, DN999835
    Related
    ENST00000625107.1

  2. NR_144508.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3' exon, compared to variant 1.
    Source sequence(s)
    AC013652, BX647708, DN999835

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    39250669..39254845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    37055605..37059781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001302797.1: Suppressed sequence

    Description
    NM_001302797.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  2. NM_207445.3: Suppressed sequence

    Description
    NM_207445.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8N8G6.1 GenPept UniProtKB/Swiss-Prot:Q8N8G6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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