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LINC02389 long intergenic non-protein coding RNA 2389 [ Homo sapiens (human) ]

Gene ID: 400046, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02389provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2389provided by HGNC
Primary source
HGNC:HGNC:53316
See related
Ensembl:ENSG00000255693 AllianceGenome:HGNC:53316
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02389 in Genome Data Viewer
Location:
12q14.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (64883774..64977522)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (64862788..64956515)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (65277554..65371302)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4626 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4627 Neighboring gene TBC1 domain family member 30 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4628 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:65219125-65219632 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6601 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:65252401-65252902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:65252903-65253402 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6603 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:65282633-65283275 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:65283276-65283917 Neighboring gene ribosomal protein L7 pseudogene 39 Neighboring gene uncharacterized LOC124903125 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:65325441-65325942 Neighboring gene long intergenic non-protein coding RNA 2231 Neighboring gene RNA, U6atac small nuclear 42, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6604 Neighboring gene uncharacterized LOC107984522 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:65386408-65386934 Neighboring gene WNT inhibitory factor 1 Neighboring gene RNA, U6 small nuclear 166, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LINC02389/miR-7-5p Regulated Cisplatin Resistance of Non-Small-Cell Lung Cancer via Promoting Oxidative Stress. Ma P, et al. Anal Cell Pathol (Amst), 2022. PMID 36311891, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LINC02389/miR-7-5p Regulated Cisplatin Resistance of Non-Small-Cell Lung Cancer via Promoting Oxidative Stress.
    Title: LINC02389/miR-7-5p Regulated Cisplatin Resistance of Non-Small-Cell Lung Cancer via Promoting Oxidative Stress.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ41278

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027727.1 RefSeqGene

    Range
    5001..98749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_033988.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078815, AK123272, BU782746
    Related
    ENST00000535058.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    64883774..64977522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    64862788..64956515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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