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EDRF1-DT EDRF1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 399821, updated on 10-Oct-2023

Summary

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Official Symbol
EDRF1-DTprovided by HGNC
Official Full Name
EDRF1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54128
See related
Ensembl:ENSG00000224023 AllianceGenome:HGNC:54128
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.4), brain (RPKM 0.9) and 24 other tissues See more
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Genomic context

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See EDRF1-DT in Genome Data Viewer
Location:
10q26.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (125705290..125719493, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (126587712..126601944, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (127393859..127408062, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724793 Neighboring gene NANOG hESC enhancer GRCh37_chr10:127273327-127273841 Neighboring gene testis expressed 36 Neighboring gene Sharpr-MPRA regulatory region 5499 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:127350251-127351450 Neighboring gene ALDOA pseudogene 2 Neighboring gene uncharacterized LOC283038 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4193 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4194 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:127408179-127409161 Neighboring gene erythroid differentiation regulatory factor 1 Neighboring gene EDRF1 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 6903 Neighboring gene matrix metallopeptidase 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ37035

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033847.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK094354, AL158835
    Related
    ENST00000423178.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    125705290..125719493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    126587712..126601944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207425.1: Suppressed sequence

    Description
    NM_207425.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

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