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etf1.S eukaryotic translation termination factor 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 399462, updated on 17-Aug-2024

Summary

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Official Symbol
etf1.S
Official Full Name
eukaryotic translation termination factor 1 S homeolog
Primary source
Xenbase:XB-GENE-5744946
Locus tag
XELAEV_18020003mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cl1; etf1
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Genomic context

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Location:
chromosome: 3S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (13802226..13828862)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (13587010..13613698)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene follistatin like 4 S homeolog Neighboring gene Rap guanine nucleotide exchange factor 6 S homeolog Neighboring gene protein kinase C theta type Neighboring gene SAP30-like S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In Xenopus laevis, the product of a developmentally regulated mRNA is structurally and functionally homologous to a Saccharomyces cerevisiae protein involved in translation fidelity. Tassan JP, et al. Mol Cell Biol, 1993 May. PMID 8474443, Free PMC Article
  2. A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor. Frolova L, et al. Nature, 1994 Dec 15. PMID 7990965
  3. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  4. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables translation release factor activity IEA
Inferred from Electronic Annotation
more info
  
enables translation termination factor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of translational termination ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within translational termination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
eukaryotic peptide chain release factor subunit 1
Names
SUP1 homolog
eRF1
eukaryotic release factor 1
omnipotent suppressor protein 1 homolog
suppressor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090894.1 → NP_001084363.1  eukaryotic peptide chain release factor subunit 1

    See identical proteins and their annotated locations for NP_001084363.1

    Status: PROVISIONAL

    Source sequence(s)
    Z14253
    UniProtKB/Swiss-Prot
    P35615, Q5D031
    UniProtKB/TrEMBL
    A0A974HQL7
    Conserved Domains (4) summary
    COG1503
    Location:11 → 419
    eRF1; Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
    pfam03463
    Location:18 → 136
    eRF1_1; eRF1 domain 1
    pfam03464
    Location:145 → 277
    eRF1_2; eRF1 domain 2
    pfam03465
    Location:280 → 417
    eRF1_3; eRF1 domain 3

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    13802226..13828862
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041587578.1 → XP_041443512.1  eukaryotic peptide chain release factor subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J1MP46
    Conserved Domains (1) summary
    COG1503
    Location:11 → 371
    eRF1; Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P35615.1 GenPept UniProtKB/Swiss-Prot:P35615

Gene LinkOut

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