tcerg1.L transcription elongation regulator 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tcerg1.L
Official Full Name: transcription elongation regulator 1 L homeolog
Primary source: Xenbase:XB-GENE-6253901
Locus tag: XELAEV_18017214mg
See related: EnsemblRapid:ENSXLAG00005029361 AllianceGenome:Xenbase:XB-GENE-6253901
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ca150; taf2s; tcerg1
Summary: Predicted to enable RNA polymerase binding activity and transcription coregulator activity. Predicted to be located in nucleus. Orthologous to human TCERG1 (transcription elongation regulator 1). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 3L

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3L	NC_054375.1 (47574640..47600213)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	3L	NC_030728.1 (33197435..33223204)

Chromosome 3L - NC_054375.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA polymerase binding	IEA Inferred from Electronic Annotation more info
enables transcription coregulator activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transcription elongation regulator 1 L homeolog

Names: potential gravity-related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001090839.1 → NP_001084308.1 transcription elongation regulator 1 L homeolog

See identical proteins and their annotated locations for NP_001084308.1

Status: PROVISIONAL

Source sequence(s)

AY851297

UniProtKB/TrEMBL

Q2NME8, Q2VPN7

Related

ENSXLAP00005087662.1, ENSXLAT00005089324.1

Conserved Domains (3) summary

PHA03160
Location:55 → 118

PHA03160; hypothetical protein; Provisional

smart00456
Location:122 → 157

WW; Domain with 2 conserved Trp (W) residues

cd00201
Location:466 → 495

WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...