U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rbm25.S RNA binding motif protein 25 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 399426, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
rbm25.S
Official Full Name
RNA binding motif protein 25 S homeolog
Primary source
Xenbase:XB-GENE-865939
Locus tag
XELAEV_18041077mg
See related
EnsemblRapid:ENSXLAG00005025081 AllianceGenome:Xenbase:XB-GENE-865939
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rbm25; rnpc7
Summary
Predicted to enable mRNA binding activity. Predicted to act upstream of or within mRNA processing and regulation of alternative mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Orthologous to human RBM25 (RNA binding motif protein 25). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rbm25.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (4973133..5007387)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (4967911..5002231)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene D4, zinc and double PHD fingers, family 3 S homeolog Neighboring gene zinc finger FYVE-type containing 1 S homeolog Neighboring gene presenilin 1 S homeolog Neighboring gene papilin, proteoglycan-like sulfated glycoprotein S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RNA binding motif protein 25 S homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001122877.1 → NP_001116349.1  RNA binding motif protein 25 S homeolog

    See identical proteins and their annotated locations for NP_001116349.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124904
    UniProtKB/TrEMBL
    A0A974C1I7, Q08B25
    Related
    ENSXLAP00005074505.1, ENSXLAT00005076085.1
    Conserved Domains (2) summary
    smart00311
    Location:734 → 807
    PWI; PWI, domain in splicing factors
    cd12446
    Location:85 → 167
    RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    4973133..5007387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.