krr1.S KRR1, small subunit (SSU) processome component, homolog S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: krr1.S
Official Full Name: KRR1, small subunit (SSU) processome component, homolog S homeolog
Primary source: Xenbase:XB-GENE-1007985
Locus tag: XELAEV_18025637mg
See related: EnsemblRapid:ENSXLAG00005006835
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: hrb2; krr1; krr1.L
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Genomic context

Location:: chromosome: 4S

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4S	NC_054378.1 (99057355..99070176, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4S	NC_030731.1 (92719957..92732907, complement)

Chromosome 4S - NC_054378.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within rRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within ribosome biogenesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleolus	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
part_of small-subunit processome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: KRR1, small subunit (SSU) processome component, homolog S homeolog

Names: KRR1, small subunit (SSU) processome component, homolog L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001090819.1 → NP_001084288.1 KRR1, small subunit (SSU) processome component, homolog S homeolog

See identical proteins and their annotated locations for NP_001084288.1

Status: PROVISIONAL

Source sequence(s)

BC072210

UniProtKB/TrEMBL

Q6INR3

Related

ENSXLAP00005020048.1, ENSXLAT00005020472.1

Conserved Domains (2) summary

COG1094
Location:51 → 210

Krr1; rRNA processing protein Krr1/Pno1, contains KH domain [Translation, ribosomal structure and biogenesis]

cl00098
Location:158 → 183

KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

99057355..99070176 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_018259535.1 → XP_018115024.1 KRR1, small subunit (SSU) processome component, homolog S homeolog isoform X1

UniProtKB/TrEMBL

A0A1L8GGZ2, A0A974D146