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nfix.S nuclear factor I X [ Xenopus laevis (African clawed frog) ]

Gene ID: 399341, updated on 4-Sep-2024

Summary

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Official Symbol
nfix.S
Official Full Name
nuclear factor I X
Primary source
Xenbase:XB-GENE-17334247
Locus tag
XELAEV_18000768mg
See related
EnsemblRapid:ENSXLAG00005011657
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nfix; nfix2; nfi-x2; nfix.L
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Genomic context

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Location:
chromosome: 3S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (124648474..124766513, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694811.1 (1096702..1224314, complement)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene acid phosphatase 5, tartrate resistant S homeolog Neighboring gene lymphoblastic leukemia associated hematopoiesis regulator 1 S homeolog Neighboring gene growth arrest and DNA damage-inducible proteins-interacting protein 1 S homeolog Neighboring gene DAN domain family member 5, BMP antagonist S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulation of the DNA-binding and transcriptional activities of Xenopus laevis NFI-X by a novel C-terminal domain. Roulet E, et al. Mol Cell Biol, 1995 Oct. PMID 7565707, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84220

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA replication IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nuclear factor I X; xenopus NFI-X2 transcription factor
Names
nuclear factor I X S homeolog
nuclear factor I/X (CCAAT-binding transcription factor) L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090689.1 → NP_001084158.1  nuclear factor I X

    See identical proteins and their annotated locations for NP_001084158.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081152
    UniProtKB/TrEMBL
    Q66IX4, Q91522
    Conserved Domains (3) summary
    cl00055
    Location:60 → 164
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:204 → 420
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:1 → 38
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    124648474..124766513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018239506.2 → XP_018094995.1  xenopus NFI-X2 transcription factor isoform X4

    UniProtKB/TrEMBL
    A0A8J0TUF3, Q9PSA0
    Related
    ENSXLAP00005034063.1, ENSXLAT00005034946.1

  2. XM_018239505.2 → XP_018094994.1  xenopus NFI-X2 transcription factor isoform X3

    UniProtKB/TrEMBL
    A0A8J0U205, Q91522
    Related
    ENSXLAP00005034053.1, ENSXLAT00005034936.1

  3. XM_041587577.1 → XP_041443511.1  xenopus NFI-X2 transcription factor isoform X2

    UniProtKB/TrEMBL
    A0A8J1MPZ9, Q9PS99
    Related
    ENSXLAP00005034061.1, ENSXLAT00005034944.1
    Conserved Domains (2) summary
    pfam10524
    Location:9 → 46
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:67 → 168
    MH1; N-terminal Mad Homology 1 (MH1) domain

  4. XM_041587576.1 → XP_041443510.1  xenopus NFI-X2 transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A8J1MR42, Q9PS99
    Related
    ENSXLAP00005034049.1, ENSXLAT00005034932.1
    Conserved Domains (2) summary
    pfam10524
    Location:2 → 38
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:59 → 167
    MH1; N-terminal Mad Homology 1 (MH1) domain
Nucleotide Protein Strain
Heading Accession and Version

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