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opn1lw.L opsin 1 (cone pigments), long-wave-sensitive L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 399310, updated on 17-Aug-2024

Summary

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Official Symbol
opn1lw.L
Official Full Name
opsin 1 (cone pigments), long-wave-sensitive L homeolog
Primary source
Xenbase:XB-GENE-955013
Locus tag
XELAEV_18003536mg
See related
EnsemblRapid:ENSXLAG00005020173
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
opn1lw; opn1lw1
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Genomic context

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See opn1lw.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (12779144..12785390)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694841.1 (190033..196279)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121397118 Neighboring gene methyl-CpG binding protein 2 L homeolog Neighboring gene arginine vasopressin receptor 2 L homeolog Neighboring gene uncharacterized LOC108704794

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved cis-elements in the Xenopus red opsin promoter necessary for cone-specific expression. Babu S, et al. FEBS Lett, 2006 Feb 20. PMID 16466721
  2. Sequential genesis and determination of cone and rod photoreceptors in Xenopus. Chang WS, et al. J Neurobiol, 1998 Jun. PMID 9622007
  3. The molecular genetics and evolution of red and green color vision in vertebrates. Yokoyama S, et al. Genetics, 2001 Aug. PMID 11545071, Free PMC Article
  4. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. identify novel conserved elements that regulate spatial expression of tetrapod red cone opsin genes
    Title: Conserved cis-elements in the Xenopus red opsin promoter necessary for cone-specific expression.
Submit: New GeneRIF Correction

General gene information

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Homology

Clone Names

  • MGC84243

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables photoreceptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within absorption of UV light IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within absorption of visible light IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within phototransduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within visual perception IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
red-sensitive opsin
Names
long-wave sensitive 1 cone opsin
red cone opsin
red cone photoreceptor pigment
red-sensitive cone opsin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090645.1 → NP_001084114.1  red-sensitive opsin

    See identical proteins and their annotated locations for NP_001084114.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081156
    UniProtKB/Swiss-Prot
    O12948, Q66IX0
    UniProtKB/TrEMBL
    A0A7T0BQW5
    Related
    ENSXLAP00005059090.1, ENSXLAT00005060529.1
    Conserved Domains (1) summary
    cd15081
    Location:41 → 332
    7tmA_LWS_opsin; long wave-sensitive opsins, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    12779144..12785390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O12948.1 GenPept UniProtKB/Swiss-Prot:O12948

Gene LinkOut

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