hdac2.S histone deacetylase 2 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: hdac2.S
Official Full Name: histone deacetylase 2 S homeolog
Primary source: Xenbase:XB-GENE-485811
Locus tag: XELAEV_18029255mg
See related: EnsemblRapid:ENSXLAG00005002285
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: hdac2
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Genomic context

Location:: chromosome: 5S

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5S	NC_054380.1 (55841050..55870014, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5S	NC_030733.1 (58408938..58438140)

Chromosome 5S - NC_054380.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables histone deacetylase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chromatin organization	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of NuRD complex	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: histone deacetylase 2 S homeolog

NP_001084011.1

EC 3.5.1.98

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001090542.1 → NP_001084011.1 histone deacetylase 2 S homeolog

See identical proteins and their annotated locations for NP_001084011.1

Status: PROVISIONAL

Source sequence(s)

BC081054

UniProtKB/TrEMBL

A0A974CSQ9, Q66J55

Related

ENSXLAP00005007064.1, ENSXLAT00005007173.1

Conserved Domains (2) summary

cd10011
Location:9 → 374

HDAC2; Histone deacetylase 2 (HDAC2)

PTZ00063
Location:9 → 398

PTZ00063; histone deacetylase; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

55841050..55870014 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)