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thrap3.S thyroid hormone receptor associated protein 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 399219, updated on 4-Nov-2024

Summary

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Official Symbol
thrap3.S
Official Full Name
thyroid hormone receptor associated protein 3 S homeolog
Primary source
Xenbase:XB-GENE-992060
Locus tag
XELAEV_18015131mg
See related
EnsemblRapid:ENSXLAG00005004236 AllianceGenome:Xenbase:XB-GENE-992060
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
thrap3; trap150; thrap3.L
Summary
Predicted to enable DNA binding activity and transcription coregulator activity. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be part of mediator complex. Orthologous to human THRAP3 (thyroid hormone receptor associated protein 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See thrap3.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (72432817..72481203, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (65424845..65465826, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016697149.1 (1..1793, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene granulocyte colony-stimulating factor receptor-like Neighboring gene SH3 domain containing 21 S homeolog Neighboring gene MAP7 domain containing 1 S homeolog Neighboring gene probable beta-D-xylosidase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC132228

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
thyroid hormone receptor associated protein 3 S homeolog
Names
thyroid hormone receptor associated protein 3 L homeolog
thyroid hormone receptor-associated protein, 150 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001103187.1 → NP_001096657.1  thyroid hormone receptor associated protein 3 S homeolog

    See identical proteins and their annotated locations for NP_001096657.1

    Status: PROVISIONAL

    Source sequence(s)
    BC110959
    UniProtKB/TrEMBL
    Q2TAF1
    Conserved Domains (1) summary
    pfam15440
    Location:184 → 698
    THRAP3_BCLAF1; THRAP3/BCLAF1 family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    72432817..72481203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041583043.1 → XP_041438977.1  thyroid hormone receptor associated protein 3 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1MB97
    Conserved Domains (1) summary
    PTZ00121
    Location:311 → 515
    PTZ00121; MAEBL; Provisional

  2. XM_041583044.1 → XP_041438978.1  thyroid hormone receptor associated protein 3 S homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1MBL1
    Conserved Domains (1) summary
    PTZ00121
    Location:311 → 515
    PTZ00121; MAEBL; Provisional

  3. XM_041583039.1 → XP_041438973.1  thyroid hormone receptor associated protein 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    Q2TAF1
    Conserved Domains (1) summary
    pfam15440
    Location:184 → 698
    THRAP3_BCLAF1; THRAP3/BCLAF1 family

  4. XM_041583040.1 → XP_041438974.1  thyroid hormone receptor associated protein 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    Q2TAF1
    Conserved Domains (1) summary
    pfam15440
    Location:184 → 698
    THRAP3_BCLAF1; THRAP3/BCLAF1 family

  5. XM_041583041.1 → XP_041438975.1  thyroid hormone receptor associated protein 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    Q2TAF1
    Conserved Domains (1) summary
    pfam15440
    Location:184 → 698
    THRAP3_BCLAF1; THRAP3/BCLAF1 family

  6. XM_041583042.1 → XP_041438976.1  thyroid hormone receptor associated protein 3 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1MC90
    Related
    ENSXLAP00005012669.1, ENSXLAT00005012848.1
    Conserved Domains (1) summary
    PTZ00121
    Location:276 → 480
    PTZ00121; MAEBL; Provisional

  7. XM_041583045.1 → XP_041438979.1  thyroid hormone receptor associated protein 3 S homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J1MB98
    Conserved Domains (1) summary
    PTZ00121
    Location:311 → 515
    PTZ00121; MAEBL; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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