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fut6.S fucosyltransferase 6 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 399049, updated on 18-Sep-2024

Summary

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Official Symbol
fut6.S
Official Full Name
fucosyltransferase 6 S homeolog
Primary source
Xenbase:XB-GENE-6037639
Locus tag
XELAEV_18024247mg
See related
EnsemblRapid:ENSXLAG00005009980
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fut6
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Genomic context

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See fut6.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (2720162..2738641)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (2602398..2621017)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 S homeolog Neighboring gene uncharacterized LOC121393153 Neighboring gene zinc finger protein 81 S homeolog Neighboring gene transfer RNA threonine (anticodon AGU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of the blood group Lewis(a) determinant in the oviducal mucins of Xenopus tropicalis. Guérardel Y, et al. FEBS Lett, 2003 Nov 20. PMID 14623089
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within fucosylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
fucosyltransferase 6 S homeolog
Names
alpha 1,3/4 fucosyltransferase Lewis 1
fucosyltransferase 6 (alpha (1,3) fucosyltransferase)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090195.1 → NP_001083664.1  fucosyltransferase 6 S homeolog

    See identical proteins and their annotated locations for NP_001083664.1

    Status: PROVISIONAL

    Source sequence(s)
    AY278679
    UniProtKB/TrEMBL
    A0A974HKU4, Q3KQ28, Q7SZU7
    Related
    ENSXLAP00005029370.1, ENSXLAT00005030110.1
    Conserved Domains (2) summary
    pfam00852
    Location:176 → 345
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:52 → 160
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    2720162..2738641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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