polr3k.S polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: polr3k.S
Official Full Name: polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa S homeolog
Primary source: Xenbase:XB-GENE-6254643
Locus tag: XELAEV_18047467mg
See related: EnsemblRapid:ENSXLAG00005016655
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: polr3k
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 9_10S

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10S	NC_054388.1 (83907586..83911619, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10S	NC_030741.1 (77217773..77221806, complement)

Chromosome 9_10S - NC_054388.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA-directed 5'-3' RNA polymerase activity	IEA Inferred from Electronic Annotation more info
enables RNA polymerase III activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within termination of RNA polymerase III transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of DNA-directed RNA polymerase complex	IEA Inferred from Electronic Annotation more info
part_of RNA polymerase III complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa S homeolog

Names: DNA-directed RNA polymerases III 12.5 kDa polypeptide

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001090189.1 → NP_001083658.1 polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa S homeolog

See identical proteins and their annotated locations for NP_001083658.1

Status: PROVISIONAL

Source sequence(s)

BC061683

UniProtKB/TrEMBL

A0A974H1H0, Q6P7G0

Related

ENSXLAP00005049017.1, ENSXLAT00005050154.1

Conserved Domains (3) summary

smart00661
Location:4 → 53

RPOL9; RNA polymerase subunit 9

COG1594
Location:1 → 108

RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]

cd10509
Location:61 → 108

Zn-ribbon_RPC11; C-terminal zinc ribbon domain of RPC11 subunit of RNA polymerase III

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

83907586..83911619 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)