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arih2.S ariadne RBR E3 ubiquitin protein ligase 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 399027, updated on 4-Nov-2024

Summary

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Official Symbol
arih2.S
Official Full Name
ariadne RBR E3 ubiquitin protein ligase 2 S homeolog
Primary source
Xenbase:XB-GENE-17342197
Locus tag
XELAEV_18025928mg
See related
EnsemblRapid:ENSXLAG00005021370 AllianceGenome:Xenbase:XB-GENE-17342197
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable metal ion binding activity and transferase activity. Orthologous to human ARIH2 (ariadne RBR E3 ubiquitin protein ligase 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See arih2.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (115882371..115925798, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (109467992..109511544, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 S homeolog Neighboring gene sorting nexin-30-like Neighboring gene prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) S homeolog Neighboring gene frizzled related protein 2 S homeolog Neighboring gene serine/threonine-protein kinase N-like Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68617

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC399027

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090157.1 → NP_001083626.1  uncharacterized protein LOC399027

    See identical proteins and their annotated locations for NP_001083626.1

    Status: PREDICTED

    Source sequence(s)
    BC061943
    UniProtKB/TrEMBL
    Q6P6Z3
    Related
    ENSXLAP00005062698.1, ENSXLAT00005064151.1
    Conserved Domains (1) summary
    PHA02562
    Location:107 → 140
    46; endonuclease subunit; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    115882371..115925798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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