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lpgat1.S lysophosphatidylglycerol acyltransferase 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398980, updated on 4-Nov-2024

Summary

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Official Symbol
lpgat1.S
Official Full Name
lysophosphatidylglycerol acyltransferase 1 S homeolog
Primary source
Xenbase:XB-GENE-985549
Locus tag
XELAEV_18028700mg
See related
EnsemblRapid:ENSXLAG00005002261 AllianceGenome:Xenbase:XB-GENE-985549
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
lpgat1
Summary
Predicted to enable acyltransferase activity. Predicted to act upstream of or within phosphatidylinositol acyl-chain remodeling. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human LPGAT1 (lysophosphatidylglycerol acyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See lpgat1.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (17526461..17581468)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (17571485..17626665)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene denticleless E3 ubiquitin protein ligase homolog S homeolog Neighboring gene integrator complex subunit 7 S homeolog Neighboring gene NIMA-related kinase 2 S homeolog Neighboring gene solute carrier family 30 member 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68966

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphatidylinositol acyl-chain remodeling IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lysophosphatidylglycerol acyltransferase 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090069.1 → NP_001083538.1  lysophosphatidylglycerol acyltransferase 1 S homeolog

    See identical proteins and their annotated locations for NP_001083538.1

    Status: PROVISIONAL

    Source sequence(s)
    BC060749
    UniProtKB/TrEMBL
    Q6P9I6, Q7ZT38
    Conserved Domains (2) summary
    cd07990
    Location:59 → 275
    LPLAT_LCLAT1-like; Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like
    pfam16076
    Location:264 → 319
    Acyltransf_C; Acyltransferase C-terminus

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    17526461..17581468
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018264291.2 → XP_018119780.1  lysophosphatidylglycerol acyltransferase 1 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0VD25

  2. XM_018264289.2 → XP_018119778.1  lysophosphatidylglycerol acyltransferase 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8G1D6, A0A974CQX4, Q7ZT38
    Related
    ENSXLAP00005006825.1, ENSXLAT00005006934.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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