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plekhb2.S pleckstrin homology domain containing B2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398960, updated on 18-Sep-2024

Summary

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Official Symbol
plekhb2.S
Official Full Name
pleckstrin homology domain containing B2 S homeolog
Primary source
Xenbase:XB-GENE-983206
Locus tag
XELAEV_18029908mg
See related
EnsemblRapid:ENSXLAG00005032939
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
plekhb2
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Genomic context

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See plekhb2.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (114248968..114297605, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (107492709..107510569, complement)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene autophagy related 16 like 1 S homeolog Neighboring gene small Cajal body-specific RNA 6 Neighboring gene S-antigen; retina and pineal gland (arrestin) S homeolog Neighboring gene uncharacterized LOC121394313 Neighboring gene serine/threonine-protein kinase N2 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class U protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68594

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pleckstrin homology domain containing B2 S homeolog
Names
pleckstrin homology domain containing, family B (evectins) member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090031.1 → NP_001083500.1  pleckstrin homology domain containing B2 S homeolog

    See identical proteins and their annotated locations for NP_001083500.1

    Status: PROVISIONAL

    Source sequence(s)
    BC060409
    UniProtKB/TrEMBL
    A0A974CSK4, A0A974CX61, Q6PA91
    Related
    ENSXLAP00005098696.1, ENSXLAT00005100528.1
    Conserved Domains (1) summary
    cd13265
    Location:1 → 108
    PH_evt; Evectin Pleckstrin homology (PH) domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    114248968..114297605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041563933.1 → XP_041419867.1  pleckstrin homology domain containing B2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974CSK4, A0A974CX61, Q6PA91
    Conserved Domains (1) summary
    cd13265
    Location:1 → 108
    PH_evt; Evectin Pleckstrin homology (PH) domain

  2. XM_041563932.1 → XP_041419866.1  pleckstrin homology domain containing B2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974CSK4, A0A974CX61, Q6PA91
    Related
    ENSXLAP00005098754.1, ENSXLAT00005100591.1
    Conserved Domains (1) summary
    cd13265
    Location:1 → 108
    PH_evt; Evectin Pleckstrin homology (PH) domain

  3. XM_041563934.1 → XP_041419868.1  pleckstrin homology domain containing B2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974CSK4, A0A974CX61, Q6PA91
    Conserved Domains (1) summary
    cd13265
    Location:1 → 108
    PH_evt; Evectin Pleckstrin homology (PH) domain
Nucleotide Protein Strain
Heading Accession and Version

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