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mapre3.S microtubule associated protein RP/EB family member 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398932, updated on 4-Nov-2024

Summary

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Official Symbol
mapre3.S
Official Full Name
microtubule associated protein RP/EB family member 3 S homeolog
Primary source
Xenbase:XB-GENE-5827224
Locus tag
XELAEV_18030301mg
See related
EnsemblRapid:ENSXLAG00005003893 AllianceGenome:Xenbase:XB-GENE-5827224
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
eb3; rp3; ebf3; ebf3-s; mapre3; mapre3.L
Summary
Predicted to enable microtubule plus-end binding activity. Predicted to act upstream of or within several processes, including protein localization to microtubule; regulation of microtubule polymerization or depolymerization; and spindle assembly. Predicted to be located in microtubule cytoskeleton. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See mapre3.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (142407843..142436630)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (135690570..135716527)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene DNA (cytosine-5-)-methyltransferase 3 alpha S homeolog Neighboring gene uncharacterized LOC108718325 Neighboring gene dihydropyrimidinase like 5 S homeolog Neighboring gene transmembrane protein 214 S homeolog Neighboring gene transfer RNA tyrosine (anticodon GUA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68667

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
  
enables microtubule plus-end binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein localization to microtubule IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of microtubule polymerization or depolymerization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within spindle assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasmic microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule plus-end IEA
Inferred from Electronic Annotation
more info
  
located_in spindle midzone IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
microtubule associated protein RP/EB family member 3 S homeolog
Names
microtubule associated protein RP/EB family member 3 L homeolog
microtubule-associated protein, RP/EB family, member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089980.1 → NP_001083449.1  microtubule associated protein RP/EB family member 3 S homeolog

    See identical proteins and their annotated locations for NP_001083449.1

    Status: PROVISIONAL

    Source sequence(s)
    BC060416
    UniProtKB/TrEMBL
    A0A974HIK8, Q6PA84
    Related
    ENSXLAP00005011622.1, ENSXLAT00005011796.1
    Conserved Domains (1) summary
    COG5217
    Location:10 → 270
    BIM1; Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    142407843..142436630
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041563930.1 → XP_041419864.1  microtubule associated protein RP/EB family member 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HIK8, Q6PA84
    Conserved Domains (1) summary
    COG5217
    Location:10 → 270
    BIM1; Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

  2. XM_018264287.2 → XP_018119776.1  microtubule associated protein RP/EB family member 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HIK8, Q6PA84
    Conserved Domains (1) summary
    COG5217
    Location:10 → 270
    BIM1; Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

  3. XM_018264288.2 → XP_018119777.1  microtubule associated protein RP/EB family member 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HIK8, Q6PA84
    Conserved Domains (1) summary
    COG5217
    Location:10 → 270
    BIM1; Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Nucleotide Protein Strain
Heading Accession and Version

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