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LOC398927 cathepsin S [ Xenopus laevis (African clawed frog) ]

Gene ID: 398927, updated on 18-Aug-2023

Summary

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Gene symbol
LOC398927
Gene description
cathepsin S
Locus tag
XELAEV_18040350mg
See related
EnsemblRapid:ENSXLAG00005034110
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See LOC398927 in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (117843727..117854786)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (103010757..103031775)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene ceramide synthase 2 L homeolog Neighboring gene annexin A9 L homeolog Neighboring gene cathepsin S Neighboring gene cathepsin K-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68723

General protein information

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Preferred Names
cathepsin S; uncharacterized protein LOC398927

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    117843727..117854786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018228757.2 → XP_018084246.1  cathepsin S

    UniProtKB/TrEMBL
    A0A1L8FBT1, A0A974C9Z4, Q6PA77
    Related
    ENSXLAP00005101888.1, ENSXLAT00005103875.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001089972.1: Suppressed sequence

    Description
    NM_001089972.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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