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usp36.S ubiquitin specific peptidase 36 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398902, updated on 4-Nov-2024

Summary

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Official Symbol
usp36.S
Official Full Name
ubiquitin specific peptidase 36 S homeolog
Primary source
Xenbase:XB-GENE-923321
Locus tag
XELAEV_18046475mg
See related
EnsemblRapid:ENSXLAG00005029547 AllianceGenome:Xenbase:XB-GENE-923321
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
usp36
Summary
Predicted to enable cysteine-type deubiquitinase activity. Predicted to act upstream of or within protein deubiquitination; proteolysis; and regulation of apoptotic process. Predicted to be located in cytosol and nucleus. Orthologous to human USP36 (ubiquitin specific peptidase 36). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See usp36.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (24772509..24919163)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (23755487..23898860)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene notum, palmitoleoyl-protein carboxylesterase S homeolog Neighboring gene alveolar soft part sarcoma chromosome region, candidate 1 S homeolog Neighboring gene ETS translocation variant 4 Neighboring gene Aly/REF export factor S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81933

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein deubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 36; ubiquitin specific peptidase 36 S homeolog
XP_018093831.1
XP_018093832.1
XP_018093833.1
XP_018093834.1
XP_018093835.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    24772509..24919163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018238342.2 → XP_018093831.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X1

    UniProtKB/TrEMBL
    A0A8J0U2G2
    Related
    ENSXLAP00005088562.1, ENSXLAT00005090231.1

  2. XM_018238345.2 → XP_018093834.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X2

    UniProtKB/TrEMBL
    A0A8J0TZH0

  3. XM_018238346.2 → XP_018093835.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X3

    UniProtKB/TrEMBL
    A0A8J0U0N9
    Related
    ENSXLAP00005088669.1, ENSXLAT00005090338.1

  4. XM_018238343.2 → XP_018093832.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X1

    UniProtKB/TrEMBL
    A0A8J0U2G2

  5. XM_018238344.2 → XP_018093833.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X1

    UniProtKB/TrEMBL
    A0A8J0U2G2

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001089925.1: Suppressed sequence

    Description
    NM_001089925.1: This RefSeq was permanently suppressed because it appears to be significantly truncated compared to related proteins.

  2. NM_001170441.1: Suppressed sequence

    Description
    NM_001170441.1: This RefSeq was temporarily suppressed because the CDS was partial.
Nucleotide Protein Strain
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