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tbrg4.L transforming growth factor beta regulator 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398879, updated on 17-Aug-2024

Summary

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Official Symbol
tbrg4.L
Official Full Name
transforming growth factor beta regulator 4 L homeolog
Primary source
Xenbase:XB-GENE-969732
Locus tag
XELAEV_18030537mg
See related
EnsemblRapid:ENSXLAG00005036450
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tbrg4
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Genomic context

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Location:
chromosome: 6L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (6131118..6145761)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (3718282..3733238)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 12 L homeolog Neighboring gene cyclic nucleotide binding domain containing 2 L homeolog Neighboring gene uncharacterized LOC121394522 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene uncharacterized LOC108718680 Neighboring gene cerebral cavernous malformations 2 protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Fast kinase domain-containing protein 3 is a mitochondrial protein essential for cellular respiration. Simarro M, et al. Biochem Biophys Res Commun, 2010 Oct 22. PMID 20869947, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within mitochondrial mRNA processing ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within regulation of mitochondrial mRNA stability IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of mitochondrial mRNA stability ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial matrix ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
FAST kinase domain-containing protein 4
Names
protein TBRG4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089881.1 → NP_001083350.1  FAST kinase domain-containing protein 4

    See identical proteins and their annotated locations for NP_001083350.1

    Status: PROVISIONAL

    Source sequence(s)
    BC060456
    UniProtKB/Swiss-Prot
    Q6PA48
    UniProtKB/TrEMBL
    A0A8J1KWV9, A0A974CLN9
    Related
    ENSXLAP00005109043.1, ENSXLAT00005111226.1
    Conserved Domains (3) summary
    smart00952
    Location:568 → 622
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:371 → 439
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:453 → 537
    FAST_2; FAST kinase-like protein, subdomain 2

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    6131118..6145761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041565325.1 → XP_041421259.1  FAST kinase domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8J1KYB5, A0A974CLN9
    Related
    ENSXLAP00005109054.1, ENSXLAT00005111237.1
    Conserved Domains (1) summary
    smart00952
    Location:568 → 600
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans

  2. XM_041565324.1 → XP_041421258.1  FAST kinase domain-containing protein 4 isoform X1

    UniProtKB/Swiss-Prot
    Q6PA48
    UniProtKB/TrEMBL
    A0A8J1KWV9, A0A974CLN9
    Conserved Domains (3) summary
    smart00952
    Location:568 → 622
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:371 → 439
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:453 → 537
    FAST_2; FAST kinase-like protein, subdomain 2
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PA48.1 GenPept UniProtKB/Swiss-Prot:Q6PA48

Gene LinkOut

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