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gnpda2.L glucosamine-6-phosphate deaminase 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398874, updated on 4-Nov-2024

Summary

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Official Symbol
gnpda2.L
Official Full Name
glucosamine-6-phosphate deaminase 2 L homeolog
Primary source
Xenbase:XB-GENE-983387
Locus tag
XELAEV_18005247mg
See related
EnsemblRapid:ENSXLAG00005020758 AllianceGenome:Xenbase:XB-GENE-983387
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sb52; gnpda2
Summary
Predicted to enable glucosamine-6-phosphate deaminase activity and identical protein binding activity. Predicted to act upstream of or within N-acetylneuraminate catabolic process; carbohydrate metabolic process; and glucosamine-containing compound catabolic process. Predicted to be located in cytoplasm. Orthologous to human GNPDA2 (glucosamine-6-phosphate deaminase 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See gnpda2.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (39133831..39157783)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (29871647..29895386)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121402200 Neighboring gene potassium channel tetramerization domain containing 8 L homeolog Neighboring gene Yip1 domain family member 7 L homeolog Neighboring gene GTP binding elongation factor GUF1 L homeolog Neighboring gene gamma-aminobutyric acid (GABA) A receptor, apha 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68593

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glucosamine-6-phosphate deaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within N-acetylglucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within glucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glucosamine-6-phosphate isomerase 2
Names
GNPDA 2
glcN6P deaminase 2
NP_001083339.1
XP_041430691.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089870.1 → NP_001083339.1  glucosamine-6-phosphate isomerase 2

    See identical proteins and their annotated locations for NP_001083339.1

    Status: PROVISIONAL

    Source sequence(s)
    BC060461
    UniProtKB/Swiss-Prot
    Q6PA43
    UniProtKB/TrEMBL
    A0A974I363
    Related
    ENSXLAP00005060904.1, ENSXLAT00005062356.1
    Conserved Domains (1) summary
    PRK00443
    Location:1 → 258
    nagB; glucosamine-6-phosphate deaminase; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    39133831..39157783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041574757.1 → XP_041430691.1  glucosamine-6-phosphate isomerase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LND6
    Related
    ENSXLAP00005060919.1, ENSXLAT00005062371.1
    Conserved Domains (1) summary
    PRK00443
    Location:1 → 259
    nagB; glucosamine-6-phosphate deaminase; Provisional
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PA43.1 GenPept UniProtKB/Swiss-Prot:Q6PA43

Gene LinkOut

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