scmh1.S Scm polycomb group protein homolog 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: scmh1.S
Official Full Name: Scm polycomb group protein homolog 1 S homeolog
Primary source: Xenbase:XB-GENE-17336467
Locus tag: XELAEV_18015104mg
See related: EnsemblRapid:ENSXLAG00005009818 AllianceGenome:Xenbase:XB-GENE-17336467
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary: Predicted to enable chromatin binding activity and histone binding activity. Predicted to act upstream of or within negative regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human SCMH1 (Scm polycomb group protein homolog 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 2S

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (68759667..68773913, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (64388882..64403735, complement)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables chromatin binding	IEA Inferred from Electronic Annotation more info
enables histone binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within negative regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC398796

Names: sex comb on midleg homolog 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089727.1 → NP_001083196.1 uncharacterized protein LOC398796

See identical proteins and their annotated locations for NP_001083196.1

Status: PREDICTED

Source sequence(s)

BC060018

UniProtKB/TrEMBL

A0A974DHW9, A0A974HY18, Q6AX63, Q6PAW6

Related

ENSXLAP00005028850.1, ENSXLAT00005029590.1

Conserved Domains (4) summary

cd09578
Location:603 → 672

SAM_Scm; SAM domain of Scm proteins of Polycomb group

smart00454
Location:605 → 672

SAM; Sterile alpha motif

smart00561
Location:140 → 238

MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2

pfam12140
Location:358 → 466

DUF3588; Protein of unknown function (DUF3588)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

68759667..68773913 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)