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capn11.L calpain 11, (mu/I) large subunit a L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398772, updated on 18-Sep-2024

Summary

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Official Symbol
capn11.L
Official Full Name
calpain 11, (mu/I) large subunit a L homeolog
Primary source
Xenbase:XB-GENE-940597
Locus tag
XELAEV_18026416mg
See related
EnsemblRapid:ENSXLAG00005033891
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
capn1a; capn1.L; capn1a.L
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Genomic context

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See capn11.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
23
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (24161087..24194907)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (23354400..23388563)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108716555 Neighboring gene spectrin beta chain, non-erythrocytic 5 Neighboring gene transmembrane protein 63B L homeolog Neighboring gene mitochondrial ribosomal protein L14 L homeolog Neighboring gene vascular endothelial growth factor A L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68756

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
calpain 11, (mu/I) large subunit a L homeolog
Names
calpain 1, (mu/I) large subunit L homeolog
calpain 1, (mu/I) large subunit a L homeolog
NP_001083150.1
XP_018117241.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089681.1 → NP_001083150.1  calpain 11, (mu/I) large subunit a L homeolog

    See identical proteins and their annotated locations for NP_001083150.1

    Status: PROVISIONAL

    Source sequence(s)
    BC060341
    UniProtKB/TrEMBL
    A0A974HIZ9, Q6PAF2
    Related
    ENSXLAP00005101237.1, ENSXLAT00005103214.1
    Conserved Domains (4) summary
    cd15897
    Location:537 → 565
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:537 → 704
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:49 → 345
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:366 → 510
    Calpain_III; Calpain large subunit, domain III

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    24161087..24194907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018261752.2 → XP_018117241.1  calpain 11, (mu/I) large subunit a L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HIZ9, Q6PAF2
    Related
    ENSXLAP00005101313.1, ENSXLAT00005103289.1
    Conserved Domains (4) summary
    cd15897
    Location:537 → 565
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:537 → 704
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:49 → 345
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:366 → 510
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein Strain
Heading Accession and Version

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