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rbm12b.3.S RNA binding motif protein 12B gene 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398766, updated on 4-Nov-2024

Summary

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Official Symbol
rbm12b.3.S
Official Full Name
RNA binding motif protein 12B gene 3 S homeolog
Primary source
Xenbase:XB-GENE-22063333
Locus tag
XELAEV_18033870mg
See related
EnsemblRapid:ENSXLAG00005004533 AllianceGenome:Xenbase:XB-GENE-22063333
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rbm12b
Summary
Predicted to enable RNA binding activity. Predicted to be part of ribonucleoprotein complex. Orthologous to human RBM12B (RNA binding motif protein 12B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rbm12b.3.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (113543505..113550207, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (104888192..104894894, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121395266 Neighboring gene fucolectin-3-like Neighboring gene RNA-binding protein 12B-like Neighboring gene RNA binding motif protein 12B gene 1 S homeolog Neighboring gene transmembrane protein 67 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68792

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA binding motif protein 12B gene 3 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089669.1 → NP_001083138.1  RNA binding motif protein 12B gene 3 S homeolog

    See identical proteins and their annotated locations for NP_001083138.1

    Status: PROVISIONAL

    Source sequence(s)
    BC060345
    UniProtKB/TrEMBL
    Q6PAF0
    Related
    ENSXLAP00005013559.1, ENSXLAT00005013741.1
    Conserved Domains (4) summary
    COG0724
    Location:94 → 234
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12513
    Location:285 → 365
    RRM3_RBM12B; RNA recognition motif 3 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:399 → 474
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    113543505..113550207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018268631.2 → XP_018124120.1  RNA binding motif protein 12B gene 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8FTJ6, A0A974HEF4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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