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prodh2.L proline dehydrogenase (oxidase) 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398760, updated on 17-Aug-2024

Summary

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Official Symbol
prodh2.L
Official Full Name
proline dehydrogenase (oxidase) 2 L homeolog
Primary source
Xenbase:XB-GENE-5784821
Locus tag
XELAEV_18001298mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
HYPDH; prodh2
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Genomic context

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Location:
chromosome: 9_10L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (135895137..135900562, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694813.1 (449640..454381)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene calcium-binding protein 5 Neighboring gene ADP-ribosylarginine hydrolase Neighboring gene eukaryotic translation initiation factor 3 subunit C L homeolog Neighboring gene NFATC2-interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68483

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on the CH-NH group of donors ISS
Inferred from Sequence or Structural Similarity
more info
  
enables proline dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proline catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proline catabolic process to glutamate IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proline metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
hydroxyproline dehydrogenase
Names
probable proline dehydrogenase 2
probable proline oxidase 2
proline dehydrogenase 2
NP_001083128.1
XP_041431478.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089659.1 → NP_001083128.1  hydroxyproline dehydrogenase

    See identical proteins and their annotated locations for NP_001083128.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059998
    UniProtKB/Swiss-Prot
    Q6PAY6
    Conserved Domains (2) summary
    PLN02681
    Location:42 → 450
    PLN02681; proline dehydrogenase
    pfam01619
    Location:202 → 450
    Pro_dh; Proline dehydrogenase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    135895137..135900562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575544.1 → XP_041431478.1  hydroxyproline dehydrogenase isoform X1

    UniProtKB/TrEMBL
    A0A8J1LPH6
    Conserved Domains (1) summary
    cl40683
    Location:21 → 385
    Pro_dh; Proline dehydrogenase
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PAY6.1 GenPept UniProtKB/Swiss-Prot:Q6PAY6

Gene LinkOut

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