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usp5.S ubiquitin specific peptidase 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398732, updated on 17-Aug-2024

Summary

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Official Symbol
usp5.S
Official Full Name
ubiquitin specific peptidase 5 S homeolog
Primary source
Xenbase:XB-GENE-6255446
Locus tag
XELAEV_18036710mg
See related
EnsemblRapid:ENSXLAG00005022458
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
isot; usp5; usp5-a; usp5-b
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Genomic context

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See usp5.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
20
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (4540505..4562876, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (4558304..4580842, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 23 S homeolog Neighboring gene triosephosphate isomerase 1 S homeolog Neighboring gene guanine nucleotide binding protein (G protein), beta polypeptide 3 S homeolog Neighboring gene U2 spliceosomal RNA Neighboring gene prolyl 3-hydroxylase 3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a novel 29-linked polyubiquitin binding protein, Ufd3, using polyubiquitin chain analogues. Russell NS, et al. Biochemistry, 2004 Apr 27. PMID 15096053
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein deubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ubiquitin specific peptidase 5
Names
isopeptidase T
ubiquitin specific peptidase 5 (isopeptidase T) S homeolog
NP_001083082.1
XP_018082360.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089613.1 → NP_001083082.1  ubiquitin specific peptidase 5

    See identical proteins and their annotated locations for NP_001083082.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124863
    UniProtKB/TrEMBL
    A0A974CBT9, A0AUT2, Q6U7I9
    Related
    ENSXLAP00005066299.1, ENSXLAT00005067824.1
    Conserved Domains (5) summary
    COG5207
    Location:17 → 830
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:326 → 828
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd14383
    Location:629 → 677
    UBA1_UBP5; UBA1 domain found in ubiquitin carboxyl-terminal hydrolase 5 (UBP5)
    cd14386
    Location:696 → 738
    UBA2_UBP5; UBA2 domain found in ubiquitin carboxyl-terminal hydrolase 5 (UBP5)
    pfam02148
    Location:198 → 271
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    4540505..4562876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018226871.2 → XP_018082360.1  ubiquitin specific peptidase 5 isoform X1

    UniProtKB/TrEMBL
    A0A8J0T4P2, Q6U7I9
    Related
    ENSXLAP00005066273.1, ENSXLAT00005067797.1
Nucleotide Protein Strain
Heading Accession and Version

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