gtf2a1.S general transcription factor IIA 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: gtf2a1.S
Official Full Name: general transcription factor IIA 1 S homeolog
Primary source: Xenbase:XB-GENE-6255453
Locus tag: XELAEV_18041349mg
See related: EnsemblRapid:ENSXLAG00005010712
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: tf2a1; tfiia; gtf2a1; gtf2a1-a; gtf2a1-b; tfiiaa/b; tfiiaa/b-1
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Genomic context

Location:: chromosome: 8S

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8S	NC_054386.1 (24713580..24815071)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8S	NC_030739.1 (24699116..24715297)

Chromosome 8S - NC_054386.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within transcription initiation at RNA polymerase II promoter	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of transcription factor TFIIA complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: general transcription factor IIA 1 S homeolog

Names: general transcription factor IIA, 1, 19/37kDa; transcription factor IIA large subunit-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089284.1 → NP_001082753.1 general transcription factor IIA 1 S homeolog

See identical proteins and their annotated locations for NP_001082753.1

Status: PROVISIONAL

Source sequence(s)

AY218797

UniProtKB/TrEMBL

Q6XPY2, Q71N44

Related

ENSXLAP00005031695.1, ENSXLAT00005032466.1

Conserved Domains (2) summary

cd07976
Location:310 → 370

TFIIA_alpha_beta_like; Precursor of TFIIA alpha and beta subunits and similar proteins

pfam03153
Location:15 → 370

TFIIA; Transcription factor IIA, alpha/beta subunit

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

24713580..24815071

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041574134.1 → XP_041430068.1 general transcription factor IIA 1 S homeolog isoform X1

UniProtKB/TrEMBL

A0A8J1LKG2

Conserved Domains (2) summary

cd07976
Location:1159 → 1219

TFIIA_alpha_beta_like; Precursor of TFIIA alpha and beta subunits and similar proteins

cl10970
Location:513 → 830

AP_MHD_Cterm; C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD)