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trpm4.L transient receptor potential cation channel, subfamily M, member 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398685, updated on 4-Nov-2024

Summary

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Official Symbol
trpm4.L
Official Full Name
transient receptor potential cation channel, subfamily M, member 4 L homeolog
Primary source
Xenbase:XB-GENE-960845
Locus tag
XELAEV_18036203mg
See related
EnsemblRapid:ENSXLAG00005015103 AllianceGenome:Xenbase:XB-GENE-960845
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
trpm4; trpm5; trpm5.L
Summary
Human ortholog(s) of this gene implicated in erythrokeratodermia variabilis et progressiva 6 and progressive familial heart block type IB. Orthologous to human TRPM4 (transient receptor potential cation channel subfamily M member 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See trpm4.L in Genome Data Viewer
Location:
chromosome: 7L
Exon count:
26
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (123913061..123989987, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (113384809..113461702, complement)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 8 L homeolog Neighboring gene cyclin-dependent kinase inhibitor xic1 L homeolog Neighboring gene uncharacterized LOC121395639 Neighboring gene uncharacterized LOC108696794

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transient receptor potential cation channel subfamily M member 4; transient receptor potential cation channel, subfamily M, member 4 L homeolog
Names
transient receptor potential cation channel, subfamily M, member 5 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    123913061..123989987 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041569654.1 → XP_041425588.1  transient receptor potential cation channel subfamily M member 4 isoform X1

    UniProtKB/TrEMBL
    A0A8J1L7S4
    Related
    ENSXLAP00005044404.1, ENSXLAT00005045476.1
    Conserved Domains (2) summary
    TIGR00870
    Location:811 → 1167
    trp; transient-receptor-potential calcium channel protein
    cl39032
    Location:91 → 341
    LSDAT_euk; SLOG in TRPM

  2. XM_041569655.1 → XP_041425589.1  transient receptor potential cation channel subfamily M member 4 isoform X2

    UniProtKB/TrEMBL
    A0A1L8FNQ3, A0A974CH64
    Related
    ENSXLAP00005044350.1, ENSXLAT00005045423.1
    Conserved Domains (2) summary
    TIGR00870
    Location:769 → 1125
    trp; transient-receptor-potential calcium channel protein
    cl39032
    Location:49 → 299
    LSDAT_euk; SLOG in TRPM

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001089260.1: Suppressed sequence

    Description
    NM_001089260.1: This RefSeq was permanently suppressed because the protein is severely truncated compared to related sequence data.

  2. NM_001170440.1: Suppressed sequence

    Description
    NM_001170440.1: This RefSeq was temporarily suppressed because the CDS was partial.
Nucleotide Protein Strain
Heading Accession and Version

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