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pdlim1.L PDZ and LIM domain 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398648, updated on 18-Sep-2024

Summary

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Official Symbol
pdlim1.L
Official Full Name
PDZ and LIM domain 1 L homeolog
Primary source
Xenbase:XB-GENE-1004697
Locus tag
XELAEV_18034803mg
See related
EnsemblRapid:ENSXLAG00005035795
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
clim1; clp36; elfin; clp-36; pdlim1; elfin-like
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Genomic context

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See pdlim1.L in Genome Data Viewer
Location:
chromosome: 7L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (36612748..36658355, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (34221138..34266631, complement)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene helicase, lymphoid specific L homeolog Neighboring gene centromere protein T L homeolog Neighboring gene sorbin and SH3 domain containing 1 L homeolog Neighboring gene annexin A7 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC64465

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within heart development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within muscle structure development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
  
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
  
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
  
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PDZ and LIM domain 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089208.2 → NP_001082677.1  PDZ and LIM domain 1 L homeolog

    See identical proteins and their annotated locations for NP_001082677.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054254
    UniProtKB/TrEMBL
    A0A974HBK0, Q7SYV2
    Related
    ENSXLAP00005107042.1, ENSXLAT00005109154.1
    Conserved Domains (3) summary
    cd09448
    Location:256 → 307
    LIM_CLP36; This family represents the LIM domain of CLP36
    cd00992
    Location:5 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:137 → 229
    DUF4749; Domain of unknown function (DUF4749)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    36612748..36658355 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041568428.1 → XP_041424362.1  PDZ and LIM domain 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1L489
    Related
    ENSXLAP00005107055.1, ENSXLAT00005109167.1
    Conserved Domains (3) summary
    smart00735
    Location:203 → 228
    ZM; ZASP-like motif
    cd09448
    Location:338 → 389
    LIM_CLP36; This family represents the LIM domain of CLP36
    cd00992
    Location:5 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_041568429.1 → XP_041424363.1  PDZ and LIM domain 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1L4B1
    Related
    ENSXLAP00005107065.1, ENSXLAT00005109178.1
    Conserved Domains (4) summary
    smart00735
    Location:203 → 228
    ZM; ZASP-like motif
    cd09448
    Location:318 → 369
    LIM_CLP36; This family represents the LIM domain of CLP36
    cd00992
    Location:5 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    TIGR04523
    Location:219 → 297
    Mplasa_alph_rch; helix-rich Mycoplasma protein

  3. XM_041568430.1 → XP_041424364.1  PDZ and LIM domain 1 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1L5Z4, A0A974HBK0
    Related
    ENSXLAP00005107071.1, ENSXLAT00005109183.1
    Conserved Domains (3) summary
    smart00735
    Location:137 → 161
    ZM; ZASP-like motif
    cd09448
    Location:276 → 327
    LIM_CLP36; This family represents the LIM domain of CLP36
    cd00992
    Location:5 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  4. XM_041568431.1 → XP_041424365.1  PDZ and LIM domain 1 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1L6Z5
    Conserved Domains (2) summary
    smart00735
    Location:82 → 107
    ZM; ZASP-like motif
    cd09448
    Location:217 → 268
    LIM_CLP36; This family represents the LIM domain of CLP36
Nucleotide Protein Strain
Heading Accession and Version

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