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sypl1.L synaptophysin-like 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398646, updated on 4-Nov-2024

Summary

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Official Symbol
sypl1.L
Official Full Name
synaptophysin-like 1 L homeolog
Primary source
Xenbase:XB-GENE-942142
Locus tag
XELAEV_18017756mg
See related
AllianceGenome:Xenbase:XB-GENE-942142
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sypl1
Summary
Predicted to be located in synaptic vesicle membrane. Orthologous to human SYPL1 (synaptophysin like 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See sypl1.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (83148982..83159015)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (67798513..67808576)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121401512 Neighboring gene nicotinamide phosphoribosyltransferase L homeolog Neighboring gene microspherule protein 1 L homeolog Neighboring gene cadherin related family member 3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
synaptophysin-like 1 L homeolog; synaptophysin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    83148982..83159015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018252650.2 → XP_018108139.1  synaptophysin-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A974DBS0, Q6DDR7, Q7SYT7, Q7ZYB1

  2. XM_018252651.2 → XP_018108140.1  synaptophysin-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A974DBS0, Q6DDR7, Q7SYT7, Q7ZYB1

  3. XM_018252649.2 → XP_018108138.1  synaptophysin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J0UJ12, Q7SYT7, Q7ZYB1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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