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opn1sw2.S opsin 1, short wave sensitive gene 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398602, updated on 4-Nov-2024

Summary

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Official Symbol
opn1sw2.S
Official Full Name
opsin 1, short wave sensitive gene 2 S homeolog
Primary source
Xenbase:XB-GENE-5817986
Locus tag
XELAEV_18041779mg
See related
EnsemblRapid:ENSXLAG00005015719 AllianceGenome:Xenbase:XB-GENE-5817986
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
XB5817984; XB5817984.S; LOC100485989.S
Summary
Predicted to enable G protein-coupled photoreceptor activity. Predicted to act upstream of or within several processes, including cellular response to light stimulus; phototransduction; and visual perception. Predicted to be located in membrane and photoreceptor outer segment. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See opn1sw2.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (38188685..38193348)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (37722016..37726679)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 1 S homeolog Neighboring gene methyl-CpG binding protein 2 S homeolog Neighboring gene red-sensitive opsin-like Neighboring gene arginine vasopressin receptor 2 S homeolog Neighboring gene L1 cell adhesion molecule S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel Xenopus SWS2, P434 visual pigment: structure, cellular location, and spectral analyses. Darden AG, et al. Mol Vis, 2003 May 16. PMID 12764253
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84766

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables G protein-coupled photoreceptor activity IEA
Inferred from Electronic Annotation
more info
  
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables photoreceptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cellular response to light stimulus IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phototransduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within visual perception IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
opsin 1, short wave sensitive gene 2 S homeolog
Names
blue-sensitive opsin-like S homeolog
green rod opsin
opsin blue sensitive
provisional ortholog of opsin 1, short wave sensitive S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089142.1 → NP_001082611.1  opsin 1, short wave sensitive gene 2 S homeolog

    See identical proteins and their annotated locations for NP_001082611.1

    Status: PROVISIONAL

    Source sequence(s)
    AY177405
    UniProtKB/TrEMBL
    A0A974C3F9, Q68ES7, Q7SZK8
    Related
    ENSXLAP00005046198.1, ENSXLAT00005047297.1
    Conserved Domains (2) summary
    pfam00001
    Location:64 → 315
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl00337
    Location:114 → 184
    PT_UbiA; UbiA family of prenyltransferases (PTases)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    38188685..38193348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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