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higd1a.S HIG1 hypoxia inducible domain family member 1A S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398593, updated on 4-Nov-2024

Summary

Official Symbol
higd1a.S
Official Full Name
HIG1 hypoxia inducible domain family member 1A S homeolog
Primary source
Xenbase:XB-GENE-6256025
Locus tag
XELAEV_18032773mg
See related
EnsemblRapid:ENSXLAG00005030314 AllianceGenome:Xenbase:XB-GENE-6256025
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
hig1; yghl1; higd1a; higd1aa; higd1a-a; higd1a-b
Summary
Predicted to act upstream of or within mitochondrial respirasome assembly. Predicted to be located in membrane and mitochondrion. Orthologous to human HIGD1A (HIG1 hypoxia inducible domain family member 1A). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See higd1a.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (5669047..5676123)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (5269062..5276690)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene gap junction protein gamma 2 S homeolog Neighboring gene cytochrome P450 family 8 subfamily B member 1, gene 1 S homeolog Neighboring gene hedgehog acyltransferase like S homeolog Neighboring gene kelch like family member 40 S homeolog

Genomic regions, transcripts, and products

General protein information

Preferred Names
HIG1 domain family, member 1A a
Names
HIG1 hypoxia inducible domain family, member 1A a
putative growth hormone like protein-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089129.1NP_001082598.1  HIG1 domain family, member 1A a

    See identical proteins and their annotated locations for NP_001082598.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097512
    UniProtKB/TrEMBL
    A0A974CI84, Q7ZZZ3
    Related
    ENSXLAP00005090649.1, ENSXLAT00005092327.1
    Conserved Domains (1) summary
    pfam04588
    Location:2977
    HIG_1_N; Hypoxia induced protein conserved region

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    5669047..5676123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)