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hnrnpa0.L heterogeneous nuclear ribonucleoprotein A0 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398455, updated on 4-Nov-2024

Summary

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Official Symbol
hnrnpa0.L
Official Full Name
heterogeneous nuclear ribonucleoprotein A0 L homeolog
Primary source
Xenbase:XB-GENE-1000580
Locus tag
XELAEV_18004598mg
See related
AllianceGenome:Xenbase:XB-GENE-1000580
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
hnrpa0; hnrnpa0
Summary
Predicted to enable mRNA 3'-UTR binding activity. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See hnrnpa0.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (37525568..37527094, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694880.1 (496757..498283, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene transcriptional activator protein Pur-alpha Neighboring gene heterogeneous nuclear ribonucleoprotein A/B L homeolog Neighboring gene uncharacterized LOC121401443 Neighboring gene uncharacterized LOC108705307

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC130809

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein A0 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001088945.1 → NP_001082414.1  heterogeneous nuclear ribonucleoprotein A0 L homeolog

    See identical proteins and their annotated locations for NP_001082414.1

    Status: PROVISIONAL

    Source sequence(s)
    BC106305
    UniProtKB/TrEMBL
    A0A8J0PSL9, A0A974GZS9, A0AA97PZ70, Q6DKN1, Q7ZYU2
    Conserved Domains (3) summary
    cd12326
    Location:10 → 88
    RRM1_hnRNPA0; RNA recognition motif 1 found in heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0) and similar proteins
    cd12579
    Location:104 → 183
    RRM2_hnRNPA0; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0) and similar proteins
    pfam11627
    Location:251 → 276
    HnRNPA1; Nuclear factor hnRNPA1

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    37525568..37527094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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