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lgals9c.L lectin, galactoside-binding, soluble, 9C L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398444, updated on 18-Sep-2024

Summary

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Official Symbol
lgals9c.L
Official Full Name
lectin, galactoside-binding, soluble, 9C L homeolog
Primary source
Xenbase:XB-GENE-6256322
Locus tag
XELAEV_18012856mg
See related
EnsemblRapid:ENSXLAG00005002455
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
lgals9c; lgals9c-a; lgals9c-b; lgals9c.S; xgalectin-IIIb
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Genomic context

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See lgals9c.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (107622399..107635536, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (103143862..103156963)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene nucleoporin 88kDa L homeolog Neighboring gene rabaptin, RAB GTPase binding effector protein 1 L homeolog Neighboring gene kinase suppressor of ras 1 L homeolog Neighboring gene WD repeat and SOCS box containing 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the Xenopus galectin family. Three structurally different types as in mammals and regulated expression during embryogenesis. Shoji H, et al. J Biol Chem, 2003 Apr 4. PMID 12538594
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables galactoside binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of CD4-positive, alpha-beta T cell proliferation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of type II interferon production IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lectin, galactoside-binding, soluble, 9C L homeolog
Names
galectin family xgalectin-IIIb
lectin, galactoside-binding, soluble, 9C S homeolog
xgalectin-III

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001088929.1 → NP_001082398.1  lectin, galactoside-binding, soluble, 9C L homeolog

    See identical proteins and their annotated locations for NP_001082398.1

    Status: PROVISIONAL

    Source sequence(s)
    AB080017
    UniProtKB/TrEMBL
    Q4KL90, Q7ZTB8
    Related
    ENSXLAP00005007386.1, ENSXLAT00005007495.1
    Conserved Domains (2) summary
    cd00070
    Location:179 → 307
    GLECT; Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may ...
    pfam00337
    Location:12 → 143
    Gal-bind_lectin; Galactoside-binding lectin

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    107622399..107635536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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