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LOC398398 aquaporin [ Xenopus laevis (African clawed frog) ]

Gene ID: 398398, updated on 18-Aug-2023

Summary

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Gene symbol
LOC398398
Gene description
aquaporin
Locus tag
XELAEV_18011361mg
See related
EnsemblRapid:ENSXLAG00005034381
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC398398 in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (7866155..7871052, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (7659530..7664427, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene Na(+)/H(+) exchange regulatory cofactor NHE-RF3 Neighboring gene G protein-coupled receptor 89B L homeolog Neighboring gene GTP binding protein 8 L homeolog Neighboring gene gap junction protein alpha 8 L homeolog Neighboring gene gap junction protein alpha 5 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and functional characterization of a novel aquaporin from Xenopus laevis oocytes. Virkki LV, et al. J Biol Chem, 2002 Oct 25. PMID 12192003
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC85176

General protein information

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Preferred Names
aquaporin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001088841.1 → NP_001082310.1  aquaporin

    See identical proteins and their annotated locations for NP_001082310.1

    Status: PROVISIONAL

    Source sequence(s)
    BC090201
    UniProtKB/TrEMBL
    A0A974DLQ5, Q5EAY3, Q8JG68
    Related
    ENSXLAP00005102706.1, ENSXLAT00005104701.1
    Conserved Domains (1) summary
    cd00333
    Location:26 → 264
    MIP; Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    7866155..7871052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials