gtf2f2.S general transcription factor IIF subunit 2 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: gtf2f2.S
Official Full Name: general transcription factor IIF subunit 2 S homeolog
Primary source: Xenbase:XB-GENE-866607
Locus tag: XELAEV_18015771mg
See related: EnsemblRapid:ENSXLAG00005032125 AllianceGenome:Xenbase:XB-GENE-866607
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: btf4; RAP30; tf2f2; tfiif; gtf2f2; gtf2f2.1
Summary: Predicted to enable DNA binding activity. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIF complex. Orthologous to human GTF2F2 (general transcription factor IIF subunit 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 2S

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (125319167..125421495)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (116272210..116374596)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within transcription by RNA polymerase II	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within transcription initiation at RNA polymerase II promoter	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of transcription factor TFIIF complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: general transcription factor IIF subunit 2

Names: ATP-dependent helicase gtf2f2; TFIIF-beta; general transcription factor IIF, polypeptide 2, 30kDa, gene 1; transcription factor RAP30; transcription initiation factor IIF subunit beta; transcription initiation factor RAP30

NP_001082266.1

EC 3.6.4.12

XP_018103622.1

EC 3.6.4.12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.