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spty2d1.S SPT2 chromatin protein domain containing 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398281, updated on 18-Sep-2024

Summary

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Official Symbol
spty2d1.S
Official Full Name
SPT2 chromatin protein domain containing 1 S homeolog
Primary source
Xenbase:XB-GENE-5940059
Locus tag
XELAEV_18024666mg
See related
EnsemblRapid:ENSXLAG00005004455
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
P16H6; spty2d1
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Genomic context

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See spty2d1.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (23517728..23536996, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (22968481..22987880, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein MGC81040 Neighboring gene lactate dehydrogenase A S homeolog Neighboring gene phosphatidylinositol glycan anchor biosynthesis class U protein Neighboring gene 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1-like Neighboring gene serine/threonine-protein kinase N2-like Neighboring gene serine/threonine-protein kinase N2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic screening and expression analysis of the head organizer genes in Xenopus embryos. Shibata M, et al. Dev Biol, 2001 Nov 15. PMID 11784032
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81339

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables RNA polymerase I core binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables histone binding IEA
Inferred from Electronic Annotation
more info
  
enables histone binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables histone chaperone activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within heterochromatin formation ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within nucleosome assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nucleosome assembly ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein SPT2 homolog
Names
Protein P16H6
SPT2 domain-containing protein 1
SPT2, Suppressor of Ty, domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001137568.1 → NP_001131040.1  protein SPT2 homolog

    See identical proteins and their annotated locations for NP_001131040.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068789
    UniProtKB/Swiss-Prot
    Q6NU13, Q8UW69
    UniProtKB/TrEMBL
    A0A974CY74
    Related
    ENSXLAP00005013322.1, ENSXLAT00005013504.1
    Conserved Domains (2) summary
    pfam08243
    Location:695 → 792
    SPT2; SPT2 chromatin protein
    cl01503
    Location:380 → 522
    TrbL; TrbL/VirB6 plasmid conjugal transfer protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    23517728..23536996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NU13.1 GenPept UniProtKB/Swiss-Prot:Q6NU13

Gene LinkOut

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