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gpm6b.S glycoprotein M6B S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398217, updated on 4-Nov-2024

Summary

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Official Symbol
gpm6b.S
Official Full Name
glycoprotein M6B S homeolog
Primary source
Xenbase:XB-GENE-6077871
Locus tag
XELAEV_18015453mg
See related
EnsemblRapid:ENSXLAG00005001361 AllianceGenome:Xenbase:XB-GENE-6077871
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
DMg; m6b; gpm6b; DMgamma
Summary
Predicted to act upstream of or within neuron projection development. Predicted to be located in plasma membrane. Is expressed in nervous system; vestibuloauditory system; and visual system. Orthologous to human GPM6B (glycoprotein M6B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See gpm6b.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (97137348..97226537)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (88072366..88161345)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene trafficking from ER to golgi regulator S homeolog Neighboring gene gem nuclear organelle associated protein 8 S homeolog Neighboring gene oral-facial-digital syndrome 1 protein-like Neighboring gene trafficking protein particle complex subunit 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved and divergent expression patterns of the proteolipid protein gene family in the amphibian central nervous system. Yoshida M, et al. J Neurosci Res, 1999 Jul 1. PMID 10397631
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC79869

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within neuron projection development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glycoprotein M6B S homeolog
Names
myelin PLP-related membrane protein DM gamma1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001088617.1 → NP_001082086.1  glycoprotein M6B S homeolog

    See identical proteins and their annotated locations for NP_001082086.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077253
    UniProtKB/TrEMBL
    A0A974DI06, Q6AZU1, Q98ST3
    Related
    ENSXLAP00005004143.1, ENSXLAT00005004209.1
    Conserved Domains (1) summary
    pfam01275
    Location:3 → 239
    Myelin_PLP; Myelin proteolipid protein (PLP or lipophilin)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    97137348..97226537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018248118.2 → XP_018103607.1  glycoprotein M6B S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0UKU2, Q98ST3

  2. XM_018248116.2 → XP_018103605.1  glycoprotein M6B S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0UGN0, Q98ST3
    Related
    ENSXLAP00005004145.1, ENSXLAT00005004211.1

  3. XM_018248117.2 → XP_018103606.1  glycoprotein M6B S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UHY8, Q98ST3
    Related
    ENSXLAP00005004133.1, ENSXLAT00005004199.1
Nucleotide Protein Strain
Heading Accession and Version

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