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paaf1.S proteasomal ATPase associated factor 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398057, updated on 4-Nov-2024

Summary

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Official Symbol
paaf1.S
Official Full Name
proteasomal ATPase associated factor 1 S homeolog
Primary source
Xenbase:XB-GENE-5904792
Locus tag
XELAEV_18016429mg
See related
EnsemblRapid:ENSXLAG00005012912 AllianceGenome:Xenbase:XB-GENE-5904792
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
paaf; paaf1; rpn14; wdr71
Summary
Predicted to be part of proteasome complex. Orthologous to human PAAF1 (proteasomal ATPase associated factor 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See paaf1.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (165652246..165667816, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (156153087..156168764, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCHC domain-containing protein 3-like Neighboring gene TRPM8 channel-associated factor homolog Neighboring gene uncharacterized LOC108710055 Neighboring gene gastrula zinc finger protein XlCGF48.2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The thyroid hormone-induced tail resorption program during Xenopus laevis metamorphosis. Brown DD, et al. Proc Natl Acad Sci U S A, 1996 Mar 5. PMID 8700860, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
proteasomal ATPase associated factor 1 S homeolog
Names
gene 16
proteasomal ATPase-associated factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001088327.1 → NP_001081796.1  proteasomal ATPase associated factor 1 S homeolog

    See identical proteins and their annotated locations for NP_001081796.1

    Status: PROVISIONAL

    Source sequence(s)
    U41857
    UniProtKB/TrEMBL
    Q5I056, Q91652
    Related
    ENSXLAP00005038070.1, ENSXLAT00005038982.1
    Conserved Domains (3) summary
    COG2319
    Location:37 → 372
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:73 → 109
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:68 → 362
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    165652246..165667816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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