frat1.S frequently rearranged in advanced T-cell lymphomas 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: frat1.S
Official Full Name: frequently rearranged in advanced T-cell lymphomas 1 S homeolog
Primary source: Xenbase:XB-GENE-865735
Locus tag: XELAEV_18033878mg
See related: EnsemblRapid:ENSXLAG00005005558 AllianceGenome:Xenbase:XB-GENE-865735
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: gbp; frat1
Summary: Acts upstream of or within dorsal/ventral axis specification. Predicted to be located in cytoplasm. Orthologous to human FRAT1 (FRAT regulator of WNT signaling pathway 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 6S

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6S	NC_054382.1 (113938540..113941108, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6S	NC_030735.1 (105284122..105286690, complement)

Chromosome 6S - NC_054382.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within dorsal/ventral axis specification	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: GSK-3-binding protein

Names: GSK-3 binding protein GBP; gsk binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001088305.1 → NP_001081774.1 GSK-3-binding protein

See identical proteins and their annotated locations for NP_001081774.1

Status: PROVISIONAL

Source sequence(s)

BC076771

UniProtKB/Swiss-Prot

O93343, Q6DFG6

UniProtKB/TrEMBL

A0A974CMB2

Related

ENSXLAP00005016393.1, ENSXLAT00005016687.1

Conserved Domains (1) summary

pfam05350
Location:1 → 146

GSK-3_bind; Glycogen synthase kinase-3 binding

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

113938540..113941108 complement

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GenBank, FASTA, Sequence Viewer (Graphics)