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katnb1.L katanin regulatory subunit B1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398032, updated on 18-Sep-2024

Summary

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Official Symbol
katnb1.L
Official Full Name
katanin regulatory subunit B1 L homeolog
Primary source
Xenbase:XB-GENE-998277
Locus tag
XELAEV_18022848mg
See related
EnsemblRapid:ENSXLAG00005017166
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
katnb1
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Genomic context

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See katnb1.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
22
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (70450297..70481529, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (65209560..65240874, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide gated channel beta 1 L homeolog Neighboring gene kinesin family member C3 L homeolog Neighboring gene dynein regulatory complex subunit 7 L homeolog Neighboring gene zona pellucida protein D L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Katanin is responsible for the M-phase microtubule-severing activity in Xenopus eggs. McNally FJ, et al. Mol Biol Cell, 1998 Jul. PMID 9658175, Free PMC Article
  2. Identification of katanin, an ATPase that severs and disassembles stable microtubules. McNally FJ, et al. Cell, 1993 Nov 5. PMID 8221885
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within microtubule depolymerization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within microtubule severing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
part_of katanin complex IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in spindle IEA
Inferred from Electronic Annotation
more info
  
located_in spindle ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in spindle pole IEA
Inferred from Electronic Annotation
more info
  
located_in spindle pole ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
katanin p80 WD40 repeat-containing subunit B1
Names
katanin p80 (WD repeat containing) subunit B 1 L homeolog
katanin p80 WD40-containing subunit B1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001088285.1 → NP_001081754.1  katanin p80 WD40 repeat-containing subunit B1

    See identical proteins and their annotated locations for NP_001081754.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097654
    UniProtKB/Swiss-Prot
    O93320, Q4V7Y7, Q6DE69
    UniProtKB/TrEMBL
    A0A974CYR5
    Related
    ENSXLAP00005050710.1, ENSXLAT00005051867.1
    Conserved Domains (4) summary
    COG2319
    Location:5 → 298
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam13925
    Location:497 → 648
    Katanin_con80; con80 domain of Katanin
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    70450297..70481529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018256527.2 → XP_018112016.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    UniProtKB/TrEMBL
    A0A1L8GLG1, A0A974CYR5, A0A974HP31
    Conserved Domains (4) summary
    PHA03247
    Location:311 → 480
    PHA03247; large tegument protein UL36; Provisional
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]
    pfam13925
    Location:497 → 648
    Katanin_con80; con80 domain of Katanin

  2. XM_018256526.1 → XP_018112015.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    UniProtKB/TrEMBL
    A0A1L8GLG1, A0A974CYR5, A0A974HP31
    Conserved Domains (4) summary
    PHA03247
    Location:311 → 480
    PHA03247; large tegument protein UL36; Provisional
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]
    pfam13925
    Location:497 → 648
    Katanin_con80; con80 domain of Katanin

  3. XM_018256528.2 → XP_018112017.1  katanin p80 WD40 repeat-containing subunit B1 isoform X2

    UniProtKB/TrEMBL
    A0A8J0UST2, A0A974CYR5
    Related
    ENSXLAP00005050675.1, ENSXLAT00005051832.1

  4. XM_041589183.1 → XP_041445117.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    UniProtKB/TrEMBL
    A0A1L8GLG1, A0A974CYR5, A0A974HP31
    Conserved Domains (4) summary
    PHA03247
    Location:311 → 480
    PHA03247; large tegument protein UL36; Provisional
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]
    pfam13925
    Location:497 → 648
    Katanin_con80; con80 domain of Katanin
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4V7Y7.1 GenPept UniProtKB/Swiss-Prot:Q4V7Y7

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