U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rax.L retina and anterior neural fold homeobox L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 397999, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
rax.L
Official Full Name
retina and anterior neural fold homeobox L homeolog
Primary source
Xenbase:XB-GENE-866185
Locus tag
XELAEV_18008401mg
See related
EnsemblRapid:ENSXLAG00005023316
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rx; rx1; rx2; Xrax; Xrx1; Xrx2; rax1; rx-1; rx1a; rx2a; Xrx1A; rax-a; rax-b
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rax.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (218897331..218901808)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (205726392..205730869)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene lectin, mannose binding 1 L homeolog Neighboring gene complexin-4-like Neighboring gene gastrin releasing peptide L homeolog Neighboring gene SEC11 homolog C, signal peptidase complex subunit L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Rx homeobox gene is essential for vertebrate eye development. Mathers PH, et al. Nature, 1997 Jun 5. PMID 9177348
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
retinal homeobox protein Rx-B
Names
retina and anterior neural fold homeobox protein B
retinal homeobox 2A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001088220.1 → NP_001081689.1  retinal homeobox protein Rx-B

    See identical proteins and their annotated locations for NP_001081689.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123153
    UniProtKB/Swiss-Prot
    O42567, Q0IHH4
    UniProtKB/TrEMBL
    A0A974DWY9, A0A974E4L0
    Related
    ENSXLAP00005068838.1, ENSXLAT00005070373.1
    Conserved Domains (2) summary
    pfam00046
    Location:134 → 186
    Homeobox; Homeobox domain
    pfam03826
    Location:298 → 314
    OAR; OAR domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    218897331..218901808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O42567.2 GenPept UniProtKB/Swiss-Prot:O42567

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials